A-Level Chemistry AQA Notes

3.3.13 Amino acids, proteins, and DNA (A-Level)

Proteins
  • Proteins are sequences of amino acids joined by peptide links
  • ​Peptide linkages are formed from condensation reactions
Picture
  • ​Hydrolysis of the peptide link produces the constituent amino acids
Picture
  • There are three levels of protein structure: primary, secondary and tertiary
    • Primary structure is the sequence of amino acids in the polypeptide chain.
    • Secondary structure is the way the chains of amino acids interact with each other to form either an a-helix or a b-pleated sheet.
    • Tertiary structure is the three-dimensional shape into which the a-helix or b-pleated sheet is folded.
Picture
Picture
  • The secondary and tertiary structures are a consequence of various types of intermolecular forces
    • Hydrogen bonds – these stabilise both the secondary and tertiary structures
    • London and dipole-dipole forces – these stabilise the tertiary structure
    • Disulphide bonds – these are only important when the amino acid cysteine is part of the protein in the tertiary structure
Picture

​Enzymes
  • An enzyme is a protein-based biological catalyst.
  • Every enzyme has an active site, which is a part of the three-dimensional tertiary protein structure of an enzyme that is responsible for its catalytic activity
  • ​The lock and key theory of enzyme activity states that the substrate must fit exactly in the active site, with the correct orientation, in order for a reaction to happen. The wrong stereoisomer is not catalysed (stereospecific).
Picture
  • Enzyme inhibitors have similar shapes to the substrate and prevent the substrate from binding the enzyme
Picture
  • Computers can be used to design drugs which can fit into the active site
Picture

​Deoxyribonucleic Acid (DNA)
  • DNA is made up of nucleotide monomers: a phosphate group, 2-deoxyribose pentose sugar and a base. The base can be adenine, cytosine, guanine or thymine.
  • A strand of DNA is a polymer of nucleotides linked by phosphodiester bonds between the phosphate group of one nucleotide and the 2-deoxyribose of another nucleotide. Resulting in a sugar-phosphate backbone.
Picture
  • The DNA double helix is composed of two complementary DNA strands held together by hydrogen bonds between complementary base pairs
    • Adenine and thymine form two hydrogen bonds
    • Cytosine and guanine form three hydrogen bonds

​Anticancer Drugs
  • The Pt (II) complex cisplatin is used as an anticancer drug. It prevents DNA replication in cancer cells by a ligand replacement reaction with DNA in which a bond is formed between platinum and a nitrogen atom on adjacent guanines
Picture
  • The DNA strands are then kinked, so they cannot unravel properly to replicate
  • Cisplatin can have adverse side effects because it also binds to healthy cells. However, it is still used as a treatment because the advantages outweigh the disadvantages