A-Level Biology OCR Notes

2.1.3 Nucleotides and nucleic acid

Nucleotides and nucleic acid
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DNA & RNA
  • DNA & RNA are both polynucleotides.
  • ​The basic structure of a nucleotide is:
Picture
DNA
RNA
Number of Strands
​Two antiparallel strands
One strand
Length
Very long
Relatively short
Pentose Sugar
Deoxyribose
Ribos
Nitrogenous Bases
Adenine, Cytosine, Guanine & Thymine
Adenine, Cytosine, Guanine & Uracil
Function
Store genetic information
Transfer genetic information & forms ribosomes with proteins

​DNA Double Helix & Replication
  • Polynucleotides are polymers made up of many nucleotide monomers joined together by a series of condensation reactions, forming phosphodiester bonds.
  • The DNA double helix is held together by hydrogen (H) bonds between complementary base pairs.
    • 2 H bonds between Adenine & Thymine
    • 3 H bonds between Cysteine and Guanine
  • Semi conservative replication is the method in which DNA replicates, creating two molecules of DNA that consist of one original DNA strand and one newly synthesised DNA strand.
    • DNA helicase breaks H bonds between the two strands
    • Free nucleotides complementary base pair to the exposed strands
    • ​DNA polymerase catalyses condensation reactions to join adjacent nucleotides, forming phosphodiester bonds.
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​ATP
  • The structure of ATP is:
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ATP ​→ ADP
ADP ​→ ATP
​Reaction Type
Hydrolysis
Condensation
​Enzyme involved
ATP hydrolase
ATP synthase
Energy profile of reaction
Release energy
Requires energy
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  • The hydrolysis of ATP can be coupled to energy-requiring reaction and used to phosphorylate compounds.
  • The condensation of ADP to form ATP can occur during respiration and photosynthesis

​Genetic Information
  • In prokaryotic cells, DNA molecules are short, circular and not associated with proteins.
  • In eukaryotes, the nucleus contains very long, linear DNA molecules associated with proteins, called histones. Together a DNA molecule and its associated proteins form a chromosome.
  • The mitochondria and chloroplasts of eukaryotic cells also contain DNA which, like the DNA of prokaryotes, is short, circular and not associated with protein.
  • The genome is the full set of DNA found in an organism.
  • The proteasome is the full range of proteins that can be synthesised from the genome.
  • A gene is a section of DNA that code for polypeptides and functional RNA and are located at a fixed locus on a DNA molecule.
  • A sequence of three DNA bases, called a codon, codes for a specific amino acid. The genetic code is universal, non-overlapping and degenerate.
  • In eukaryotes, sections of the nuclear DNA do not code for polypeptides (introns). Exons are sections of DNA that code for amino acid sequences.

​Protein Synthesis
  • Structure of tRNA & mRNA:
Picture
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  • Transcription is the process of making messenger RNA from a DNA template.
  • DNA helicase breaks the hydrogen bonds between the DNA helix, free RNA nucleotides base pair with the exposed DNA template strand,
  • In prokaryotes, transcription results directly in the production of mRNA from DNA.
  • In eukaryotes, transcription results in the production of pre-mRNA; this is then spliced to form mRNA
  • Translation is the process of making proteins by forming a specific sequence of amino acids based on coded instructions in mRNA. RNA polymerase catalyses phosphodiester bonds between adjacent RNA nucleotides and the mRNA strand detaches, allowing the DNA helix to reform.
  • ​mRNA attaches to a ribosome on the rough endoplasmic reticulum, tRNA carries the corresponding amino acid to each codon on the mRNA one at a time, with an enzyme catalysing the formation of a peptide bond between amino acids using ATP, until a stop codon is reached and the peptide is released, folding into its tertiary structure.
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